1. Song S.H., Qu H.Z., Chen C., Hu S.N., Yu J. Differential gene expression in an elite hybrid rice cultivar (Oryza sativa, L) and its parental lines based on SAGE data. BMC Plant Biology 2007 Sep 19; 7 (1):49. IF：3.23

2. Song S.H., Huang Y.F., Wang X., Wei G., Qu H.Z., Wang W.W., Ge X.M., Hu S.N., Guozhen Liu1,Liang Y.C., Yu J. HRGD: a Database for mining potential heterosis-related genes in plants. Plant Molecular Biology. 10.1007/s11103-008-9421-6, IF: 3.847

3. Zhao D.X., Song S.H.^*, Wang Q., Zhang X.W., Hu S.N, Chen L.Q. Discovery of immune-related genes in Chinese mitten crab (Eriocheir sinensis) by expressed sequence tag analysis of haemocytes. Aquaculture. IF: 1.735 （并列第一作者）

4.Xu X.Q., Song S.H, Wang Q., Qin F., LiuK., Zhang X.W., Hu S.N., Zhao Y.L. Analysis and comparison of a set of expressed sequence tags of the parthenogenetic water flea Daphnia carinata  Molecular Genetics and Genomics. 2009,　 IF:2.978 （并列第一作者）

5. Zhu J., He F.H., Song S.H., Wang J., Yu J. How many human genes can be defined as housekeeping with current expression data? BMC Genomics 2008, 9:172. IF: 4.18

6. Wang W.W., Meng B., Ge X.M., Song S.S., Yang Y., Yu X.M., Wang L.G., Hu S.N., Liu S.Q., Yu J. Proteomic Profiling of Rice Embryos from a Hybrid Rice Cultivar and Its Parental Lines. Proteomics，2008, 8(22):4808-4821. IF: 5.479

7. Ge X.M., Chen W.H., Song S.H., Wang W.W., Hu S.N., Yu J. Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines BMC Plant Biology.2008, 8:114. IF：3.23

8. Yang M., Song S.H., Liu G.M., Chen K. F., Tian X. J., Zhao Z. Z. J, Hu S.N., Yu J. A comprehensive analysis of protein phosphatases in rice and Arabidopsis Plant Syst Evol. 2010, 289:111–126 IF:1.41

9.  Hao Y, Huang D, Guo H, Xiao M, An H, Zhao L, Zuo F, Zhang B, Hu S, Song S, Chen S, Ren F. Complete Genome Sequence of Bifidobacterium longum subsp. longum BBMN68, a New Strain from Healthy Chinese Centenarian. J Bacteriol.2010 Nov 19. IF: 3.94

10. Wanfei Liu1, 2, Dawei Huang1, 2, Kan Liu1, 2, Songnian Hu1, JunYu1, Gao Gang3*, Shuhui Song1* Discovery, identification and comparative analysis of Solanaceae non-specific lipid transfer protein (nsLtp) gene family GPB 2010 (通讯作者）

11.  J Yuan, W Liu, M Sun, S Song, J Cai and S Hu Complete Genome Sequence of Pathogenic Bacterium Riemerella anatipestifer Strain RA-GD.  J Bacteriol. 2011 IF: 3.94

12. W Zhao1*, W Liu1, 2*, D Tian1*, B Tang1*, Y Wang1, C Yu1, R Li1, Y Ling1, 2, JWu1, S Song1# and S Hu1#  wapRNA: a web-based application for the processing of RNA sequences Bioinformatics. 2011 IF:4.877 (通讯作者）

主要成果（数据库资源共享）

杂种优势潜在相关基因数据HRGD：http://hrgd.big.ac.cn/

RNA-seq在线分析工具WAP-RNA: http://waprna.big.ac.cn/